HL_7ST7_082

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7ST7|1|3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2866

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ST7|1|3|G|462
7ST7|1|3|U|463
7ST7|1|3|U|464
7ST7|1|3|A|465
7ST7|1|3|A|466
7ST7|1|3|U|467
7ST7|1|3|A|468
7ST7|1|3|C|469
7ST7|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains