HL_7ST7_116

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7ST7|1|3|U|209, 7ST7|1|3|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_116 not in the Motif Atlas

Homologous match to HL_6CZR_234

Geometric discrepancy: 0.548

The information below is about HL_6CZR_234

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

7ST7|1|3|C|207
7ST7|1|3|U|208
7ST7|1|3|U|209
7ST7|1|3|C|210
7ST7|1|3|G|211
7ST7|1|3|G|212

Current chains

Chain 3

16S rRNA

Nearby chains