HL_7SYG_003

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7SYG|1|2|A|158, 7SYG|1|2|U|160, 7SYG|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYG_003 not in the Motif Atlas

Geometric match to HL_5J7L_177

Geometric discrepancy: 0.3653

The information below is about HL_5J7L_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7SYG|1|2|G|156
7SYG|1|2|U|157
7SYG|1|2|A|158
7SYG|1|2|A|159
7SYG|1|2|U|160
7SYG|1|2|U|161
7SYG|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24