HL_7SYG_018

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYG|1|2|U|887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|C|884
7SYG|1|2|U|885
7SYG|1|2|A|886
7SYG|1|2|U|887
7SYG|1|2|U|888
7SYG|1|2|U|889
7SYG|1|2|U|890
7SYG|1|2|G|891
7SYG|1|2|U|892
7SYG|1|2|U|893
7SYG|1|2|G|894
7SYG|1|2|G|895
7SYG|1|2|U|896
7SYG|1|2|U|897
7SYG|1|2|U|898
7SYG|1|2|U|899
7SYG|1|2|C|900
7SYG|1|2|G|901
7SYG|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17