HL_7SYK_002

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7SYK|1|2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYK_002 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3601

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7SYK|1|2|C|69
7SYK|1|2|G|70
7SYK|1|2|G|71
7SYK|1|2|C|72
7SYK|1|2|C|73
7SYK|1|2|G|74
7SYK|1|2|G|75
7SYK|1|2|U|76
7SYK|1|2|A|77
7SYK|1|2|C|78
7SYK|1|2|A|79
7SYK|1|2|G|80

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6