HL_7SYK_004

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

7SYK|1|2|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYK_004 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2938

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SYK|1|2|U|197
7SYK|1|2|U|198
7SYK|1|2|C|199
7SYK|1|2|G|200
7SYK|1|2|C|201
7SYK|1|2|G|202

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8