HL_7SYK_018

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYK|1|2|U|887, 7SYK|1|2|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|C|884
7SYK|1|2|U|885
7SYK|1|2|A|886
7SYK|1|2|U|887
7SYK|1|2|U|888
7SYK|1|2|U|889
7SYK|1|2|U|890
7SYK|1|2|G|891
7SYK|1|2|U|892
7SYK|1|2|U|893
7SYK|1|2|G|894
7SYK|1|2|G|895
7SYK|1|2|U|896
7SYK|1|2|U|897
7SYK|1|2|U|898
7SYK|1|2|U|899
7SYK|1|2|C|900
7SYK|1|2|G|901
7SYK|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17