HL_7SYK_026

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

7SYK|1|2|U|1300, 7SYK|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|G|1294
7SYK|1|2|A|1295
7SYK|1|2|U|1296
7SYK|1|2|U|1297
7SYK|1|2|G|1298
7SYK|1|2|A|1299
7SYK|1|2|U|1300
7SYK|1|2|A|1301
7SYK|1|2|G|1302
7SYK|1|2|C|1303
7SYK|1|2|U|1304
7SYK|1|2|C|1305

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a