HL_7SYL_015

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGCGGCCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|G|692
7SYL|1|2|A|693
7SYL|1|2|G|694
7SYL|1|2|C|695
7SYL|1|2|G|696
7SYL|1|2|G|697
7SYL|1|2|C|729
7SYL|1|2|C|730
7SYL|1|2|G|731
7SYL|1|2|U|732
7SYL|1|2|C|733
7SYL|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain X

uS8