HL_7SYL_018

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYL|1|2|U|887, 7SYL|1|2|U|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|C|884
7SYL|1|2|U|885
7SYL|1|2|A|886
7SYL|1|2|U|887
7SYL|1|2|U|888
7SYL|1|2|U|889
7SYL|1|2|U|890
7SYL|1|2|G|891
7SYL|1|2|U|892
7SYL|1|2|U|893
7SYL|1|2|G|894
7SYL|1|2|G|895
7SYL|1|2|U|896
7SYL|1|2|U|897
7SYL|1|2|U|898
7SYL|1|2|U|899
7SYL|1|2|C|900
7SYL|1|2|G|901
7SYL|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6