HL_7SYL_025

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7SYL|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYL_025 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1441

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7SYL|1|2|G|1245
7SYL|1|2|A|1246
7SYL|1|2|C|1247
7SYL|1|2|U|1248
7SYL|1|2|C|1249
7SYL|1|2|A|1250
7SYL|1|2|A|1251
7SYL|1|2|C|1252
7SYL|1|2|A|1253
7SYL|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain e

eS29