HL_7SYM_002
3D structure
- PDB id
- 7SYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 7SYM|1|2|G|74, 7SYM|1|2|G|75, 7SYM|1|2|U|76
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYM_002 not in the Motif Atlas
- Geometric match to HL_5U3G_001
- Geometric discrepancy: 0.304
- The information below is about HL_5U3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
7SYM|1|2|C|69
7SYM|1|2|G|70
7SYM|1|2|G|71
7SYM|1|2|C|72
7SYM|1|2|C|73
7SYM|1|2|G|74
7SYM|1|2|G|75
7SYM|1|2|U|76
7SYM|1|2|A|77
7SYM|1|2|C|78
7SYM|1|2|A|79
7SYM|1|2|G|80
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS6
Coloring options: