HL_7SYM_010

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYM|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYM_010 not in the Motif Atlas

Geometric match to HL_6CZR_080

Geometric discrepancy: 0.2013

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

7SYM|1|2|C|462
7SYM|1|2|C|463
7SYM|1|2|A|464
7SYM|1|2|A|465
7SYM|1|2|G|466
7SYM|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6