HL_7SYM_013

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYM_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2746

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYM|1|2|A|569
7SYM|1|2|C|570
7SYM|1|2|U|571
7SYM|1|2|U|572
7SYM|1|2|U|573
7SYM|1|2|A|574
7SYM|1|2|A|575
7SYM|1|2|A|576
7SYM|1|2|U|577
7SYM|1|2|C|578
7SYM|1|2|C|579
7SYM|1|2|U|580
7SYM|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24