HL_7SYM_039

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUGUUGGGUCGC

Length

12 nucleotides

Bulged bases

7SYM|1|z|U|264, 7SYM|1|z|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|z|G|261
7SYM|1|z|U|262
7SYM|1|z|G|263
7SYM|1|z|U|264
7SYM|1|z|U|265
7SYM|1|z|G|266
7SYM|1|z|G|267
7SYM|1|z|G|268
7SYM|1|z|U|269
7SYM|1|z|C|270
7SYM|1|z|G|271
7SYM|1|z|C|272

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

40S ribosomal protein S3a

Chain c

eS27