HL_7SYM_042

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUUGCGAGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|z|C|304
7SYM|1|z|U|305
7SYM|1|z|U|306
7SYM|1|z|G|307
7SYM|1|z|C|308
7SYM|1|z|G|309
7SYM|1|z|A|310
7SYM|1|z|G|311
7SYM|1|z|U|312
7SYM|1|z|G|313

Current chains

Chain z

HCV IRES

Nearby chains

Chain b

eS26 (S26)

Chain d

eS28