HL_7SYN_020

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYN_020 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.1289

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7SYN|1|2|C|994
7SYN|1|2|G|995
7SYN|1|2|A|996
7SYN|1|2|A|997
7SYN|1|2|A|998
7SYN|1|2|G|999

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain b

eS26