HL_7SYN_034

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYN_034 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2175

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7SYN|1|2|G|1846
7SYN|1|2|G|1847
7SYN|1|2|U|1848
7SYN|1|2|G|1849
7SYN|1|2|A|1850
7SYN|1|2|A|1851
7SYN|1|2|C|1852
7SYN|1|2|C|1853

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain n

eL41