HL_7SYO_002

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7SYO|1|2|G|74, 7SYO|1|2|G|75, 7SYO|1|2|U|76

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_002 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.36

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7SYO|1|2|C|69
7SYO|1|2|G|70
7SYO|1|2|G|71
7SYO|1|2|C|72
7SYO|1|2|C|73
7SYO|1|2|G|74
7SYO|1|2|G|75
7SYO|1|2|U|76
7SYO|1|2|A|77
7SYO|1|2|C|78
7SYO|1|2|A|79
7SYO|1|2|G|80

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6