HL_7SYO_003

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7SYO|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.5162

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

7SYO|1|2|G|156
7SYO|1|2|U|157
7SYO|1|2|A|158
7SYO|1|2|A|159
7SYO|1|2|U|160
7SYO|1|2|U|161
7SYO|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24