HL_7SYO_010

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYO|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_010 not in the Motif Atlas

Geometric match to HL_5J7L_009

Geometric discrepancy: 0.141

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7SYO|1|2|C|462
7SYO|1|2|C|463
7SYO|1|2|A|464
7SYO|1|2|A|465
7SYO|1|2|G|466
7SYO|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6