HL_7SYO_017

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

7SYO|1|2|U|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|U|885
7SYO|1|2|A|886
7SYO|1|2|U|887
7SYO|1|2|U|888
7SYO|1|2|U|889
7SYO|1|2|U|890
7SYO|1|2|G|891
7SYO|1|2|U|892
7SYO|1|2|U|893
7SYO|1|2|G|894
7SYO|1|2|G|895
7SYO|1|2|U|896
7SYO|1|2|U|897
7SYO|1|2|U|898
7SYO|1|2|U|899
7SYO|1|2|C|900
7SYO|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17