HL_7SYO_019

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_019 not in the Motif Atlas

Geometric match to HL_3E5C_002

Geometric discrepancy: 0.1557

The information below is about HL_3E5C_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7SYO|1|2|C|994
7SYO|1|2|G|995
7SYO|1|2|A|996
7SYO|1|2|A|997
7SYO|1|2|A|998
7SYO|1|2|G|999

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain b

eS26