HL_7SYO_023

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

7SYO|1|2|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_023 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2406

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7SYO|1|2|U|1178
7SYO|1|2|G|1179
7SYO|1|2|C|1180
7SYO|1|2|A|1181
7SYO|1|2|A|1182
7SYO|1|2|A|1183

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

eL41