HL_7SYO_024

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7SYO|1|2|U|1248, 7SYO|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_024 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1021

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SYO|1|2|G|1245
7SYO|1|2|A|1246
7SYO|1|2|C|1247
7SYO|1|2|U|1248
7SYO|1|2|C|1249
7SYO|1|2|A|1250
7SYO|1|2|A|1251
7SYO|1|2|C|1252
7SYO|1|2|A|1253
7SYO|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10