HL_7SYO_044

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

7SYO|1|2|G|1285, 7SYO|1|2|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|G|1281
7SYO|1|2|A|1282
7SYO|1|2|C|1283
7SYO|1|2|A|1284
7SYO|1|2|G|1285
7SYO|1|2|G|1286
7SYO|1|2|A|1287
7SYO|1|2|U|1288
7SYO|1|2|U|1289
7SYO|1|2|G|1290
7SYO|1|2|A|1291
7SYO|1|2|C|1292
7SYO|1|2|A|1293
7SYO|1|2|G|1294
7SYO|1|2|A|1295
7SYO|1|2|U|1296
7SYO|1|2|U|1297
7SYO|1|2|G|1298
7SYO|1|2|A|1299
7SYO|1|2|U|1300
7SYO|1|2|A|1301
7SYO|1|2|G|1302
7SYO|1|2|C|1303
7SYO|1|2|U|1304
7SYO|1|2|C|1305
7SYO|1|2|U|1306
7SYO|1|2|U|1307
7SYO|1|2|U|1308
7SYO|1|2|C|1309
7SYO|1|2|U|1310
7SYO|1|2|C|1311
7SYO|1|2|G|1312
7SYO|1|2|A|1313
7SYO|1|2|U|1314
7SYO|1|2|U|1315
7SYO|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

uS14

Chain g

eS31