HL_7SYP_004

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

7SYP|1|2|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYP_004 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3959

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7SYP|1|2|U|197
7SYP|1|2|U|198
7SYP|1|2|C|199
7SYP|1|2|G|200
7SYP|1|2|C|201
7SYP|1|2|G|202

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8