HL_7SYP_013

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYP_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2588

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYP|1|2|A|569
7SYP|1|2|C|570
7SYP|1|2|U|571
7SYP|1|2|U|572
7SYP|1|2|U|573
7SYP|1|2|A|574
7SYP|1|2|A|575
7SYP|1|2|A|576
7SYP|1|2|U|577
7SYP|1|2|C|578
7SYP|1|2|C|579
7SYP|1|2|U|580
7SYP|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24