HL_7SYP_025

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

7SYP|1|2|U|1300, 7SYP|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|G|1294
7SYP|1|2|A|1295
7SYP|1|2|U|1296
7SYP|1|2|U|1297
7SYP|1|2|G|1298
7SYP|1|2|A|1299
7SYP|1|2|U|1300
7SYP|1|2|A|1301
7SYP|1|2|G|1302
7SYP|1|2|C|1303
7SYP|1|2|U|1304
7SYP|1|2|C|1305

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

uS14

Chain g

eS31