HL_7SYQ_012

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCUUUCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_012 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2497

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7SYQ|1|2|C|537
7SYQ|1|2|U|538
7SYQ|1|2|C|539
7SYQ|1|2|U|540
7SYQ|1|2|U|541
7SYQ|1|2|U|542
7SYQ|1|2|C|543
7SYQ|1|2|G|544
7SYQ|1|2|A|545
7SYQ|1|2|G|546

Current chains

Chain 2

18S rRNA

Nearby chains