HL_7SYQ_013

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.25

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYQ|1|2|A|569
7SYQ|1|2|C|570
7SYQ|1|2|U|571
7SYQ|1|2|U|572
7SYQ|1|2|U|573
7SYQ|1|2|A|574
7SYQ|1|2|A|575
7SYQ|1|2|A|576
7SYQ|1|2|U|577
7SYQ|1|2|C|578
7SYQ|1|2|C|579
7SYQ|1|2|U|580
7SYQ|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24