HL_7SYQ_017

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYQ|1|2|U|887, 7SYQ|1|2|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|C|884
7SYQ|1|2|U|885
7SYQ|1|2|A|886
7SYQ|1|2|U|887
7SYQ|1|2|U|888
7SYQ|1|2|U|889
7SYQ|1|2|U|890
7SYQ|1|2|G|891
7SYQ|1|2|U|892
7SYQ|1|2|U|893
7SYQ|1|2|G|894
7SYQ|1|2|G|895
7SYQ|1|2|U|896
7SYQ|1|2|U|897
7SYQ|1|2|U|898
7SYQ|1|2|U|899
7SYQ|1|2|C|900
7SYQ|1|2|G|901
7SYQ|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17