HL_7SYQ_032

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

7SYQ|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_032 not in the Motif Atlas

Geometric match to HL_4V88_220

Geometric discrepancy: 0.3384

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7SYQ|1|2|G|1658
7SYQ|1|2|U|1659
7SYQ|1|2|C|1660
7SYQ|1|2|A|1661
7SYQ|1|2|U|1662
7SYQ|1|2|A|1663
7SYQ|1|2|A|1664
7SYQ|1|2|G|1665
7SYQ|1|2|C|1666

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain T

uS13

Chain U

eS19

Chain V

uS10

Chain e

uS14