HL_7SYQ_039

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUGGGUC

Length

8 nucleotides

Bulged bases

7SYQ|1|z|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|z|G|263
7SYQ|1|z|U|264
7SYQ|1|z|U|265
7SYQ|1|z|G|266
7SYQ|1|z|G|267
7SYQ|1|z|G|268
7SYQ|1|z|U|269
7SYQ|1|z|C|270

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain c

eS27