HL_7SYQ_043

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAUUCU

Length

9 nucleotides

Bulged bases

7SYQ|1|2|U|160, 7SYQ|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|G|155
7SYQ|1|2|G|156
7SYQ|1|2|U|157
7SYQ|1|2|A|158
7SYQ|1|2|A|159
7SYQ|1|2|U|160
7SYQ|1|2|U|161
7SYQ|1|2|C|162
7SYQ|1|2|U|163

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24