HL_7SYR_007

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7SYR|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYR_007 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3515

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7SYR|1|2|G|377
7SYR|1|2|U|378
7SYR|1|2|C|379
7SYR|1|2|G|380
7SYR|1|2|C|381
7SYR|1|2|C|382
7SYR|1|2|G|383
7SYR|1|2|U|384
7SYR|1|2|G|385
7SYR|1|2|C|386
7SYR|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17