HL_7SYR_011

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7SYR|1|2|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYR_011 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1866

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7SYR|1|2|C|498
7SYR|1|2|G|499
7SYR|1|2|A|500
7SYR|1|2|C|501
7SYR|1|2|C|502
7SYR|1|2|C|503
7SYR|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain Z

eS24