3D structure

PDB id
7SYR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGACCCG
Length
7 nucleotides
Bulged bases
7SYR|1|2|A|500
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SYR_011 not in the Motif Atlas
Geometric match to HL_5NFV_001
Geometric discrepancy: 0.1866
The information below is about HL_5NFV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

7SYR|1|2|C|498
7SYR|1|2|G|499
7SYR|1|2|A|500
7SYR|1|2|C|501
7SYR|1|2|C|502
7SYR|1|2|C|503
7SYR|1|2|G|504

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4 (S4 X isoform)
Chain Z
eS24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.177 s