HL_7SYR_011
3D structure
- PDB id
- 7SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACCCG
- Length
- 7 nucleotides
- Bulged bases
- 7SYR|1|2|A|500
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYR_011 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1866
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7SYR|1|2|C|498
7SYR|1|2|G|499
7SYR|1|2|A|500
7SYR|1|2|C|501
7SYR|1|2|C|502
7SYR|1|2|C|503
7SYR|1|2|G|504
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- eS4 (S4 X isoform)
- Chain Z
- eS24
Coloring options: