HL_7SYR_013

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYR_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2097

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYR|1|2|A|569
7SYR|1|2|C|570
7SYR|1|2|U|571
7SYR|1|2|U|572
7SYR|1|2|U|573
7SYR|1|2|A|574
7SYR|1|2|A|575
7SYR|1|2|A|576
7SYR|1|2|U|577
7SYR|1|2|C|578
7SYR|1|2|C|579
7SYR|1|2|U|580
7SYR|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24