HL_7SYR_026

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7SYR|1|2|U|1300, 7SYR|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYR_026 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2216

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7SYR|1|2|A|1295
7SYR|1|2|U|1296
7SYR|1|2|U|1297
7SYR|1|2|G|1298
7SYR|1|2|A|1299
7SYR|1|2|U|1300
7SYR|1|2|A|1301
7SYR|1|2|G|1302
7SYR|1|2|C|1303
7SYR|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

uS14

Chain g

eS31