HL_7SYR_042

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGUUGGGUCGC

Length

12 nucleotides

Bulged bases

7SYR|1|z|U|264, 7SYR|1|z|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYR|1|z|G|261
7SYR|1|z|U|262
7SYR|1|z|G|263
7SYR|1|z|U|264
7SYR|1|z|U|265
7SYR|1|z|G|266
7SYR|1|z|G|267
7SYR|1|z|G|268
7SYR|1|z|U|269
7SYR|1|z|C|270
7SYR|1|z|G|271
7SYR|1|z|C|272

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain c

eS27