HL_7SYR_049

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYR|1|2|U|888, 7SYR|1|2|U|889, 7SYR|1|2|U|890, 7SYR|1|2|G|891, 7SYR|1|2|U|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYR|1|2|C|884
7SYR|1|2|U|885
7SYR|1|2|A|886
7SYR|1|2|U|887
7SYR|1|2|U|888
7SYR|1|2|U|889
7SYR|1|2|U|890
7SYR|1|2|G|891
7SYR|1|2|U|892
7SYR|1|2|U|893
7SYR|1|2|G|894
7SYR|1|2|G|895
7SYR|1|2|U|896
7SYR|1|2|U|897
7SYR|1|2|U|898
7SYR|1|2|U|899
7SYR|1|2|C|900
7SYR|1|2|G|901
7SYR|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17