HL_7SYS_013

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYS_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2088

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYS|1|2|A|569
7SYS|1|2|C|570
7SYS|1|2|U|571
7SYS|1|2|U|572
7SYS|1|2|U|573
7SYS|1|2|A|574
7SYS|1|2|A|575
7SYS|1|2|A|576
7SYS|1|2|U|577
7SYS|1|2|C|578
7SYS|1|2|C|579
7SYS|1|2|U|580
7SYS|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24