HL_7SYS_016

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7SYS|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYS_016 not in the Motif Atlas

Geometric match to HL_4V88_203

Geometric discrepancy: 0.1627

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7SYS|1|2|U|820
7SYS|1|2|G|821
7SYS|1|2|U|822
7SYS|1|2|U|823
7SYS|1|2|C|824
7SYS|1|2|A|825
7SYS|1|2|A|826
7SYS|1|2|A|827
7SYS|1|2|G|828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain Z

eS24