HL_7SYS_027

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYS_027 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0956

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7SYS|1|2|A|1353
7SYS|1|2|G|1354
7SYS|1|2|C|1355
7SYS|1|2|G|1356
7SYS|1|2|A|1357
7SYS|1|2|U|1358

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain D

uS5