HL_7SYS_030

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYS_030 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.3116

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7SYS|1|2|C|1460
7SYS|1|2|G|1461
7SYS|1|2|U|1462
7SYS|1|2|U|1463
7SYS|1|2|C|1464
7SYS|1|2|A|1465
7SYS|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17

Chain h

Receptor for Activated C Kinase 1 (RACK1)