HL_7SYS_036

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

7SYS|1|i|C|16, 7SYS|1|i|G|17, 7SYS|1|i|G|18, 7SYS|1|i|A|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYS_036 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.282

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7SYS|1|i|C|13
7SYS|1|i|A|14
7SYS|1|i|G|15
7SYS|1|i|C|16
7SYS|1|i|G|17
7SYS|1|i|G|18
7SYS|1|i|A|19
7SYS|1|i|A|20
7SYS|1|i|G|21

Current chains

Chain i

Met-tRNA-i-Met

Nearby chains

Chain j

Eukaryotic translation initiation factor 2 subunit 1