HL_7SYS_038
3D structure
- PDB id
- 7SYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYS_038 not in the Motif Atlas
- Geometric match to HL_3TUP_003
- Geometric discrepancy: 0.2584
- The information below is about HL_3TUP_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7SYS|1|i|G|52
7SYS|1|i|A|53
7SYS|1|i|U|54
7SYS|1|i|C|55
7SYS|1|i|G|56
7SYS|1|i|A|57
7SYS|1|i|A|58
7SYS|1|i|A|59
7SYS|1|i|C|60
Current chains
- Chain i
- Met-tRNA-i-Met
Nearby chains
- Chain j
- Eukaryotic translation initiation factor 2 subunit 1
Coloring options: