HL_7SYT_010

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYT|1|2|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYT_010 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1259

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7SYT|1|2|C|462
7SYT|1|2|C|463
7SYT|1|2|A|464
7SYT|1|2|A|465
7SYT|1|2|G|466
7SYT|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6