HL_7SYT_011

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYT_011 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1994

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7SYT|1|2|C|498
7SYT|1|2|G|499
7SYT|1|2|A|500
7SYT|1|2|C|501
7SYT|1|2|C|502
7SYT|1|2|C|503
7SYT|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain Z

40S ribosomal protein S24