HL_7SYT_018

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYT|1|2|U|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|2|C|884
7SYT|1|2|U|885
7SYT|1|2|A|886
7SYT|1|2|U|887
7SYT|1|2|U|888
7SYT|1|2|U|889
7SYT|1|2|U|890
7SYT|1|2|G|891
7SYT|1|2|U|892
7SYT|1|2|U|893
7SYT|1|2|G|894
7SYT|1|2|G|895
7SYT|1|2|U|896
7SYT|1|2|U|897
7SYT|1|2|U|898
7SYT|1|2|U|899
7SYT|1|2|C|900
7SYT|1|2|G|901
7SYT|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17